1 HAMP#1
127-198 aa · 72 aa · 16.8% of protein
Raw token
HAMP:127:0.0000766:198:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD15_RS01240
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_001686105
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001686105#BAD15_RS01240Stable P2CS identifier used across views.
GenomeGCF_001686105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 429 aa (56.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
209-270 aa · 62 aa · 14.5% of protein
Raw token
HisKA:209:0.00000000000000296:270:62:643 HATPase_c#3
319-428 aa · 110 aa · 25.6% of protein
Raw token
HATPase_c:319:6.32e-21:428:110:109- Raw architecture: HAMP:127:0.0000766:198:72:69#HisKA:209:0.00000000000000296:270:62:64#HATPase_c:319:6.32e-21:428:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001686105::NZ_BCYF01000053.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span8379-9668Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001686105::NZ_BCYF01000053.1::G00002Context members
BAD15_RS01240
Partner locus tags
BAD15_RS01240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234782613.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD15_RS01240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCYF01000053.1Sequence record reported by the local genomic context database.
Genomic interval8 379-9 668 nt1 290 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 379-9 668 ntGCF_001686105::NZ_BCYF01000053.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001686105::NZ_BCYF01000053.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCYF01000053.1All displayed genes belong to this local TCS context.
Neighborhood span8 379-9 668 nt1 290 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 379 nt9 668 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD15_RS01240GCF_001686105#BAD15_RS01240
HKClassicCurrent focus
8 379-9 668 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686105#BAD15_RS01240The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2181288
Simplified PFAM architecture for HKOC_2181288
PFAM domain coverage: 173 / 429 aa (40.3%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-271] | HATPase_c[319-428]
- Domain count: 2
- Matched identifier: HKOC_2181288
- Positioned domains: HisKA 209-271 ; HATPase_c 319-428
Cluster members and taxonomy
Representative gene: GCF_001686105#BAD15_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_001686105
AssemblyASM168610v1 · Contighaploid
Genome composition2 749 833 bp · 60,0% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 31 · HK 10 · RR 18CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key