1 Response_reg#1
7-119 aa · 113 aa · 51.6% of protein
Raw token
Response_reg:7:1.16e-25:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD08_RS06360
Response regulator, unclassified
Bifidobacterium pseudocatenulatum · GCF_001685965
ClassRRTypeunclassifiedLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001685965#BAD08_RS06360Stable P2CS identifier used across views.
GenomeGCF_001685965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regGerE
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 219 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GerESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 GerE#2
165-214 aa · 50 aa · 22.8% of protein
Raw token
GerE:165:0.000000000366:214:50:57- Raw architecture: Response_reg:7:1.16e-25:119:113:111#GerE:165:0.000000000366:214:50:57
- Domain description: 1 Response_reg,1 GerE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001685965::NZ_BCXY01000022.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span342498-343157Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685965::NZ_BCXY01000022.1::G00011Context members
BAD08_RS06360
Partner locus tags
BAD08_RS06360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065447234.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD08_RS06360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXY01000022.1Sequence record reported by the local genomic context database.
Genomic interval342 498-343 157 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span342 498-343 157 ntGCF_001685965::NZ_BCXY01000022.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685965::NZ_BCXY01000022.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXY01000022.1All displayed genes belong to this local TCS context.
Neighborhood span342 498-343 157 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
342 498 nt343 157 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD08_RS06360GCF_001685965#BAD08_RS06360
RRunclassifiedCurrent focus
342 498-343 157 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685965#BAD08_RS06360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1773428
Simplified PFAM architecture for RROC_1773428
PFAM domain coverage: 157 / 219 aa (71.7%)
1 aa219 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-118] | GerE[169-213]
- Domain count: 2
- Matched identifier: RROC_1773428
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; GerE 169-213 ; GerE 169-213
Cluster members and taxonomy
Representative gene: GCF_001685965#BAD08_RS06360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_001685965
AssemblyASM168596v1 · Contighaploid
Genome composition2 223 124 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key