1 HisKA_3#1
245-307 aa · 63 aa · 7.7% of protein
Raw token
HisKA_3:245:0.00000000000000192:307:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD07_RS04040
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685945
ClassHKTypeClassicLength822 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685945#BAD07_RS04040Stable P2CS identifier used across views.
GenomeGCF_001685945Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length822 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 822 aa (27.5%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa822 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
348-439 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:348:0.000000000000295:439:108:1093 HisKA_3#3
698-768 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:698:0.0000108:768:71:68- Raw architecture: HisKA_3:245:0.00000000000000192:307:63:68#HATPase_c:348:0.000000000000295:439:108:109#HisKA_3:698:0.0000108:768:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685945::NZ_BCXX01000026.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60733-64029Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685945::NZ_BCXX01000026.1::G00006Context members
BAD07_RS04035BAD07_RS04040
Partner locus tags
BAD07_RS04035BAD07_RS04040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081291591.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD07_RS04040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXX01000026.1Sequence record reported by the local genomic context database.
Genomic interval61 561-64 029 nt2 469 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 733-64 029 ntGCF_001685945::NZ_BCXX01000026.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685945::NZ_BCXX01000026.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXX01000026.1All displayed genes belong to this local TCS context.
Neighborhood span60 733-64 029 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 733 nt64 029 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD07_RS04035GCF_001685945#BAD07_RS04035
RRNarL
60 733-61 539 nt · Reverse (-)
BAD07_RS04040GCF_001685945#BAD07_RS04040
HKClassicCurrent focus
61 561-64 029 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009931415#D3H49_RS06135Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0525952
Simplified PFAM architecture for HKOC_0525952
PFAM domain coverage: 428 / 824 aa (51.9%)
1 aa824 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-157] | HisKA_3[247-310] | HATPase_c[350-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0525952
- Positioned domains: DUF7134 16-157 ; HisKA_3 247-310 ; HATPase_c 350-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_009931415#D3H49_RS06135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685945
AssemblyASM168594v1 · Contighaploid
Genome composition2 344 657 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 8 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key