1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000126:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD06_RS01290
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685925
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685925#BAD06_RS01290Stable P2CS identifier used across views.
GenomeGCF_001685925Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000341:414:98:109- Raw architecture: HisKA_3:210:0.00000000000126:271:65:68#HATPase_c:330:0.000000000341:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685925::NZ_BCXW01000004.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22085-24050Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685925::NZ_BCXW01000004.1::G00001Context members
BAD06_RS01285BAD06_RS01290
Partner locus tags
BAD06_RS01285BAD06_RS01290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065464035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD06_RS01290Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXW01000004.1Sequence record reported by the local genomic context database.
Genomic interval22 761-24 050 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 085-24 050 ntGCF_001685925::NZ_BCXW01000004.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685925::NZ_BCXW01000004.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXW01000004.1All displayed genes belong to this local TCS context.
Neighborhood span22 085-24 050 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 085 nt24 050 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD06_RS01285GCF_001685925#BAD06_RS01285
RRNarL
22 085-22 768 nt · Reverse (-)
BAD06_RS01290GCF_001685925#BAD06_RS01290
HKClassicCurrent focus
22 761-24 050 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685885#BAD04_RS03540Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2181286
Simplified PFAM architecture for HKOC_2181286
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2181286
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_001685885#BAD04_RS03540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685925
AssemblyASM168592v1 · Contighaploid
Genome composition2 249 921 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 10 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key