1 Response_reg#1
47-153 aa · 107 aa · 40.8% of protein
Raw token
Response_reg:47:4.4e-29:153:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD04_RS00230
Response regulator, AmiR_NasR family
Bifidobacterium breve · GCF_001685885
ClassRRTypeAmiR_NasRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001685885#BAD04_RS00230Stable P2CS identifier used across views.
GenomeGCF_001685885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 262 aa (59.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 ANTAR#2
200-248 aa · 49 aa · 18.7% of protein
Raw token
ANTAR:200:1.42e-17:248:49:49- Raw architecture: Response_reg:47:4.4e-29:153:108:111#ANTAR:200:1.42e-17:248:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001685885::NZ_BCXU01000003.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span48414-49202Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685885::NZ_BCXU01000003.1::G00003Context members
BAD04_RS00230
Partner locus tags
BAD04_RS00230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025221437.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP3H8F6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP3H8F6_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD04_RS00230Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXU01000003.1Sequence record reported by the local genomic context database.
Genomic interval48 414-49 202 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 414-49 202 ntGCF_001685885::NZ_BCXU01000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685885::NZ_BCXU01000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span48 414-49 202 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 414 nt49 202 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD04_RS00230GCF_001685885#BAD04_RS00230
RRAmiR_NasRCurrent focus
48 414-49 202 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569015#B7019_RS03690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644382
Simplified PFAM architecture for RROC_0644382
PFAM domain coverage: 161 / 262 aa (61.5%)
1 aa262 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[47-154] | ANTAR[196-248]
- Domain count: 2
- Matched identifier: RROC_0644382
- Positioned domains: Response_reg 47-154 ; Response_reg 47-154 ; ANTAR 196-248 ; ANTAR 196-248
Cluster members and taxonomy
Representative gene: GCF_000569015#B7019_RS03690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685885
AssemblyASM168588v1 · Contighaploid
Genome composition2 287 657 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key