1 Response_reg#1
15-117 aa · 103 aa · 46.2% of protein
Raw token
Response_reg:15:0.0000000000366:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD03_RS07590
Response regulator NarL family
Bifidobacterium breve · GCF_001685865
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001685865#BAD03_RS07590Stable P2CS identifier used across views.
GenomeGCF_001685865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 223 aa (70.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-214 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:160:3.99e-16:214:55:58- Raw architecture: Response_reg:15:0.0000000000366:117:103:111#HTH_LUXR:160:3.99e-16:214:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001685865::NZ_BCXT01000049.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4704-5375Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685865::NZ_BCXT01000049.1::G00011Context members
BAD03_RS07590
Partner locus tags
BAD03_RS07590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_052828714.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD03_RS07590Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXT01000049.1Sequence record reported by the local genomic context database.
Genomic interval4 704-5 375 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 704-5 375 ntGCF_001685865::NZ_BCXT01000049.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685865::NZ_BCXT01000049.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXT01000049.1All displayed genes belong to this local TCS context.
Neighborhood span4 704-5 375 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 704 nt5 375 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BAD03_RS07590GCF_001685865#BAD03_RS07590
RRNarLCurrent focus
4 704-5 375 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001264045#BBM0121_RS00170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1592803
Simplified PFAM architecture for RROC_1592803
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-120] | GerE[162-214]
- Domain count: 2
- Matched identifier: RROC_1592803
- Positioned domains: Response_reg 15-120 ; Response_reg 15-120 ; GerE 162-214 ; GerE 162-214
Cluster members and taxonomy
Representative gene: GCF_001264045#BBM0121_RS00170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685865
AssemblyASM168586v1 · Contighaploid
Genome composition2 387 635 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key