1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:4.35e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD03_RS03265
Response regulator OmpR family
Bifidobacterium breve · GCF_001685865
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685865#BAD03_RS03265Stable P2CS identifier used across views.
GenomeGCF_001685865Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:1.66e-33:229:77:77- Raw architecture: Response_reg:4:4.35e-38:113:111:111#Trans_reg_C:153:1.66e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685865::NZ_BCXT01000023.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37712-39851Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685865::NZ_BCXT01000023.1::G00004Context members
BAD03_RS03265BAD03_RS03270
Partner locus tags
BAD03_RS03265BAD03_RS03270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003829826.1Primary protein accession used for annex mappings.
UniProt accessionD4BQK1Primary UniProt accession resolved in the annex database.
UniProt IDD4BQK1_BIFBRDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD03_RS03265Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXT01000023.1Sequence record reported by the local genomic context database.
Genomic interval37 712-38 416 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 712-39 851 ntGCF_001685865::NZ_BCXT01000023.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685865::NZ_BCXT01000023.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXT01000023.1All displayed genes belong to this local TCS context.
Neighborhood span37 712-39 851 nt2 140 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 712 nt39 851 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD03_RS03265GCF_001685865#BAD03_RS03265
RROmpRCurrent focus
37 712-38 416 nt · Reverse (-)
BAD03_RS03270GCF_001685865#BAD03_RS03270
HKClassic
38 535-39 851 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000158015#BIFBRE_RS03035Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047467
Simplified PFAM architecture for RROC_1047467
PFAM domain coverage: 183 / 234 aa (78.2%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1047467
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-228 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_000158015#BIFBRE_RS03035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685865
AssemblyASM168586v1 · Contighaploid
Genome composition2 387 635 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 22 · HK 9 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key