1 HisKA_3#1
210-271 aa · 62 aa · 14.5% of protein
Raw token
HisKA_3:210:0.00000000000128:271:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAD01_RS08005
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685825
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685825#BAD01_RS08005Stable P2CS identifier used across views.
GenomeGCF_001685825Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 429 aa (34.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-414 aa · 85 aa · 19.8% of protein
Raw token
HATPase_c:330:0.000000000174:414:98:109- Raw architecture: HisKA_3:210:0.00000000000128:271:65:68#HATPase_c:330:0.000000000174:414:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685825::NZ_BCXR01000043.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span62827-64792Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685825::NZ_BCXR01000043.1::G00011Context members
BAD01_RS08000BAD01_RS08005
Partner locus tags
BAD01_RS08000BAD01_RS08005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065505585.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAD01_RS08005Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXR01000043.1Sequence record reported by the local genomic context database.
Genomic interval63 503-64 792 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span62 827-64 792 ntGCF_001685825::NZ_BCXR01000043.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685825::NZ_BCXR01000043.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXR01000043.1All displayed genes belong to this local TCS context.
Neighborhood span62 827-64 792 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
62 827 nt64 792 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAD01_RS08000GCF_001685825#BAD01_RS08000
RRNarL
62 827-63 510 nt · Reverse (-)
BAD01_RS08005GCF_001685825#BAD01_RS08005
HKClassicCurrent focus
63 503-64 792 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685825#BAD01_RS08005The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2181285
Simplified PFAM architecture for HKOC_2181285
PFAM domain coverage: 155 / 429 aa (36.1%)
1 aa429 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[213-274] | HATPase_c[324-416]
- Domain count: 2
- Matched identifier: HKOC_2181285
- Positioned domains: HisKA_3 213-274 ; HATPase_c 324-416
Cluster members and taxonomy
Representative gene: GCF_001685825#BAD01_RS08005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685825
AssemblyASM168582v1 · Contighaploid
Genome composition2 335 471 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key