1 HisKA_3#1
215-278 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:215:0.000000000000017:278:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BAC97_RS01430
Histidine kinase, Classic
Bifidobacterium breve · GCF_001685745
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685745#BAC97_RS01430Stable P2CS identifier used across views.
GenomeGCF_001685745Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 449 aa (40.8%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-443 aa · 119 aa · 26.5% of protein
Raw token
HATPase_c:325:0.0000000198:443:120:109- Raw architecture: HisKA_3:215:0.000000000000017:278:64:68#HATPase_c:325:0.0000000198:443:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685745::NZ_BCXN01000024.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1038-3040Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001685745::NZ_BCXN01000024.1::G00001Context members
BAC97_RS01430BAC97_RS01435
Partner locus tags
BAC97_RS01430BAC97_RS01435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065504643.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBAC97_RS01430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_BCXN01000024.1Sequence record reported by the local genomic context database.
Genomic interval1 038-2 387 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 038-3 040 ntGCF_001685745::NZ_BCXN01000024.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685745::NZ_BCXN01000024.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BCXN01000024.1All displayed genes belong to this local TCS context.
Neighborhood span1 038-3 040 nt2 003 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 038 nt3 040 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BAC97_RS01430GCF_001685745#BAC97_RS01430
HKClassicCurrent focus
1 038-2 387 nt · Forward (+)
BAC97_RS01435GCF_001685745#BAC97_RS01435
RRNarL
2 387-3 040 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685745#BAC97_RS01430The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1975498
Simplified PFAM architecture for HKOC_1975498
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[215-280]
- Domain count: 1
- Matched identifier: HKOC_1975498
- Positioned domains: HisKA_3 215-280
Cluster members and taxonomy
Representative gene: GCF_001685745#BAC97_RS01430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001685745
AssemblyASM168574v1 · Contighaploid
Genome composition2 349 925 bp · 59,0% GCBifidobacterium breve
Signal transduction countsGenes 18 · HK 8 · RR 9CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key