1 HAMP#1
58-127 aa · 70 aa · 19.3% of protein
Raw token
HAMP:58:0.00000000000244:127:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BT246_RS09990
Histidine kinase, Classic
Bacillus thuringiensis · GCF_001685565
ClassHKTypeClassicLength362 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001685565#BT246_RS09990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length362 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 362 aa (66.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa362 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 17.1% of protein
Raw token
HisKA:138:0.000000000000336:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.8% of protein
Raw token
HATPase_c:251:2.83e-23:358:109:109- Raw architecture: HAMP:58:0.00000000000244:127:70:69#HisKA:138:0.000000000000336:199:62:64#HATPase_c:251:2.83e-23:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001685565::NZ_CP015350.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1911341-1913093Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBT246_20640RefSeq proteinWP_197389499.1
Context group ID
GCF_001685565::NZ_CP015350.1::G00023Context members
BT246_RS09985BT246_RS09990
Partner locus tags
BT246_RS09985BT246_RS09990
Partner old locus tags
BT246_20630BT246_20640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_197389499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBT246_RS09990Primary locus identifier stored in the genes table.
Old locus tagBT246_20640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP015350.1Sequence record reported by the local genomic context database.
Genomic interval1 912 005-1 913 093 nt1 089 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 911 341-1 913 093 ntGCF_001685565::NZ_CP015350.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001685565::NZ_CP015350.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP015350.1All displayed genes belong to this local TCS context.
Neighborhood span1 911 341-1 913 093 nt1 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 911 341 nt1 913 093 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BT246_RS09985GCF_001685565#BT246_RS09985
RROmpR
1 911 341-1 912 039 nt · Forward (+)
BT246_RS09990GCF_001685565#BT246_RS09990
HKClassicCurrent focus
1 912 005-1 913 093 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685565#BT246_RS09990The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2736508
Simplified PFAM architecture for HKOC_2736508
PFAM domain coverage: 223 / 362 aa (61.6%)
1 aa362 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[75-126] | HisKA[138-200] | HATPase_c[252-359]
- Domain count: 3
- Matched identifier: HKOC_2736508
- Positioned domains: HAMP 75-126 ; HisKA 138-200 ; HATPase_c 252-359
Cluster members and taxonomy
Representative gene: GCF_001685565#BT246_RS09990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 428 · GCF_001685565
AssemblyASM168556v1 · Complete Genomehaploid
Genome composition6 752 488 bp · 35,5% GCBacillus thuringiensis
Signal transduction countsGenes 109 · HK 59 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key