1 HisKA#1
7-62 aa · 56 aa · 26.3% of protein
Raw token
HisKA:7:0.00000000000359:62:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
cdgr_RS05495
Histidine kinase, Classic
Clostridioides difficile · GCF_001678145
ClassHKTypeClassicLength213 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001678145#cdgr_RS05495Stable P2CS identifier used across views.
GenomeGCF_001678145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 213 aa (66.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
114-199 aa · 86 aa · 40.4% of protein
Raw token
HATPase_c:114:7.96e-16:199:91:109- Raw architecture: HisKA:7:0.00000000000359:62:56:64#HATPase_c:114:7.96e-16:199:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001678145::NZ_LYDP01000017.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span191726-192367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcdgr_00830RefSeq proteinWP_330384914.1
Context group ID
GCF_001678145::NZ_LYDP01000017.1::G00006Context members
cdgr_RS05495
Partner locus tags
cdgr_RS05495
Partner old locus tags
cdgr_00830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330384914.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagcdgr_RS05495Primary locus identifier stored in the genes table.
Old locus tagcdgr_00830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LYDP01000017.1Sequence record reported by the local genomic context database.
Genomic interval191 726-192 367 nt642 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span191 726-192 367 ntGCF_001678145::NZ_LYDP01000017.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001678145::NZ_LYDP01000017.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LYDP01000017.1All displayed genes belong to this local TCS context.
Neighborhood span191 726-192 367 nt642 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 726 nt192 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
cdgr_RS05495GCF_001678145#cdgr_RS05495
HKClassicCurrent focus
191 726-192 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001678145#cdgr_RS05495The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2930271
Simplified PFAM architecture for HKOC_2930271
PFAM domain coverage: 144 / 213 aa (67.6%)
1 aa213 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[5-62] | HATPase_c[114-199]
- Domain count: 2
- Matched identifier: HKOC_2930271
- Positioned domains: HisKA 5-62 ; HATPase_c 114-199
Cluster members and taxonomy
Representative gene: GCF_001678145#cdgr_RS05495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001678145
AssemblyASM167814v1 · Contighaploid
Genome composition4 249 791 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key