1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:7.15e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
cdgr_RS04665
Response regulator OmpR family
Clostridioides difficile · GCF_001678145
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001678145#cdgr_RS04665Stable P2CS identifier used across views.
GenomeGCF_001678145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:147:2.76e-21:223:78:77- Raw architecture: Response_reg:5:7.15e-19:114:111:111#Trans_reg_C:147:2.76e-21:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001678145::NZ_LYDP01000016.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span51477-52157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagcdgr_18570RefSeq proteinWP_021365517.1
Context group ID
GCF_001678145::NZ_LYDP01000016.1::G00021Context members
cdgr_RS04665
Partner locus tags
cdgr_RS04665
Partner old locus tags
cdgr_18570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021365517.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagcdgr_RS04665Primary locus identifier stored in the genes table.
Old locus tagcdgr_18570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LYDP01000016.1Sequence record reported by the local genomic context database.
Genomic interval51 477-52 157 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 477-52 157 ntGCF_001678145::NZ_LYDP01000016.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001678145::NZ_LYDP01000016.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LYDP01000016.1All displayed genes belong to this local TCS context.
Neighborhood span51 477-52 157 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 477 nt52 157 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
cdgr_RS04665GCF_001678145#cdgr_RS04665
RROmpRCurrent focus
51 477-52 157 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030251225#QQO60_RS15075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1143242
Simplified PFAM architecture for RROC_1143242
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-119] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1143242
- Positioned domains: Response_reg 11-119 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_030251225#QQO60_RS15075
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 61 total members. Page 1 / 2.
GCF_030251225#QQO60_RS15075 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_001678145
AssemblyASM167814v1 · Contighaploid
Genome composition4 249 791 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key