1 Response_reg#1
6-116 aa · 111 aa · 51.6% of protein
Raw token
Response_reg:6:1.96e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS27645
Response regulator NarL family
Bacillus wiedmannii · GCF_001645505
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001645505#A6280_RS27645Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 215 aa (77.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:151:2.94e-24:205:55:58- Raw architecture: Response_reg:6:1.96e-37:116:111:111#HTH_LUXR:151:2.94e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001645505::NZ_LXFN01000057.1::G00074
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span110981-112740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_21055RefSeq proteinWP_064477349.1
Context group ID
GCF_001645505::NZ_LXFN01000057.1::G00074Context members
A6280_RS27645A6280_RS27650
Partner locus tags
A6280_RS27645A6280_RS27650
Partner old locus tags
A6280_21055A6280_21060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064477349.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PLP2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PLP2_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS27645Primary locus identifier stored in the genes table.
Old locus tagA6280_21055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000057.1Sequence record reported by the local genomic context database.
Genomic interval110 981-111 628 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span110 981-112 740 ntGCF_001645505::NZ_LXFN01000057.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000057.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000057.1All displayed genes belong to this local TCS context.
Neighborhood span110 981-112 740 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
110 981 nt112 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A6280_RS27645GCF_001645505#A6280_RS27645
RRNarLCurrent focus
110 981-111 628 nt · Reverse (-)
A6280_RS27650GCF_001645505#A6280_RS27650
HKClassic
111 643-112 740 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS27645The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1910528
Simplified PFAM architecture for RROC_1910528
PFAM domain coverage: 167 / 215 aa (77.7%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1910528
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS27645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key