1 Response_reg#1
3-108 aa · 106 aa · 44.5% of protein
Raw token
Response_reg:3:0.000000000656:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS17290
Response regulator LytTR family
Bacillus wiedmannii · GCF_001645505
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001645505#A6280_RS17290Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage208 / 238 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-237 aa · 102 aa · 42.9% of protein
Raw token
LytTR:136:2.39e-30:237:102:98- Raw architecture: Response_reg:3:0.000000000656:108:108:111#LytTR:136:2.39e-30:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001645505::NZ_LXFN01000033.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span72160-72876Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_10870RefSeq proteinWP_064476045.1
Context group ID
GCF_001645505::NZ_LXFN01000033.1::G00039Context members
A6280_RS17290
Partner locus tags
A6280_RS17290
Partner old locus tags
A6280_10870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064476045.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PR45Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PR45_9BACIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS17290Primary locus identifier stored in the genes table.
Old locus tagA6280_10870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000033.1Sequence record reported by the local genomic context database.
Genomic interval72 160-72 876 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 160-72 876 ntGCF_001645505::NZ_LXFN01000033.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000033.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000033.1All displayed genes belong to this local TCS context.
Neighborhood span72 160-72 876 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 160 nt72 876 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A6280_RS17290GCF_001645505#A6280_RS17290
RRLytTRCurrent focus
72 160-72 876 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS17290The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0937041
Simplified PFAM architecture for RROC_0937041
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[138-236]
- Domain count: 2
- Matched identifier: RROC_0937041
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 138-236 ; LytTR 138-236
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS17290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key