1 Response_reg#1
5-98 aa · 94 aa · 70.7% of protein
Raw token
Response_reg:5:1.05e-28:98:95:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS15320
Response regulator, CheY family
Bacillus wiedmannii · GCF_001645505
ClassRRTypeCheYLength133 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001645505#A6280_RS15320Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length133 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage94 / 133 aa (70.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa133 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.05e-28:98:95:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001645505::NZ_LXFN01000022.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span623806-624207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_09025RefSeq proteinWP_064475752.1
Context group ID
GCF_001645505::NZ_LXFN01000022.1::G00028Context members
A6280_RS15320
Partner locus tags
A6280_RS15320
Partner old locus tags
A6280_09025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064475752.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PTZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PTZ2_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS15320Primary locus identifier stored in the genes table.
Old locus tagA6280_09025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000022.1Sequence record reported by the local genomic context database.
Genomic interval623 806-624 207 nt402 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span623 806-624 207 ntGCF_001645505::NZ_LXFN01000022.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000022.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000022.1All displayed genes belong to this local TCS context.
Neighborhood span623 806-624 207 nt402 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
623 806 nt624 207 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A6280_RS15320GCF_001645505#A6280_RS15320
RRCheYCurrent focus
623 806-624 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS15320The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2302580
Simplified PFAM architecture for RROC_2302580
PFAM domain coverage: 94 / 133 aa (70.7%)
1 aa133 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-98]
- Domain count: 1
- Matched identifier: RROC_2302580
- Positioned domains: Response_reg 5-98 ; Response_reg 5-98
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS15320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key