1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:1.62e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS13300
Response regulator OmpR family
Bacillus wiedmannii · GCF_001645505
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001645505#A6280_RS13300Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:5.13e-30:219:75:77- Raw architecture: Response_reg:6:1.62e-33:115:111:111#Trans_reg_C:150:5.13e-30:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001645505::NZ_LXFN01000022.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span220940-223073Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_07005RefSeq proteinWP_064475430.1
Context group ID
GCF_001645505::NZ_LXFN01000022.1::G00024Context members
A6280_RS13300A6280_RS13305
Partner locus tags
A6280_RS13300A6280_RS13305
Partner old locus tags
A6280_07005A6280_07010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_064475430.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS13300Primary locus identifier stored in the genes table.
Old locus tagA6280_07005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000022.1Sequence record reported by the local genomic context database.
Genomic interval220 940-221 605 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span220 940-223 073 ntGCF_001645505::NZ_LXFN01000022.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000022.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000022.1All displayed genes belong to this local TCS context.
Neighborhood span220 940-223 073 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 940 nt223 073 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A6280_RS13300GCF_001645505#A6280_RS13300
RROmpRCurrent focus
220 940-221 605 nt · Forward (+)
A6280_RS13305GCF_001645505#A6280_RS13305
HKClassic
221 598-223 073 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS13300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1683295
Simplified PFAM architecture for RROC_1683295
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1683295
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS13300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key