1 PAS#1
113-201 aa · 89 aa · 15.0% of protein
Raw token
PAS:113:0.0000000000418:201:89:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS12875
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001645505
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001645505#A6280_RS12875Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PASPAS_4HisKAHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage362 / 595 aa (60.8%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 PAS_4#2
245-348 aa · 104 aa · 17.5% of protein
Raw token
PAS_4:245:2.6e-22:348:109:1103 HisKA#3
362-424 aa · 63 aa · 10.6% of protein
Raw token
HisKA:362:1.7e-16:424:63:644 HATPase_c#4
469-574 aa · 106 aa · 17.8% of protein
Raw token
HATPase_c:469:1.11e-30:574:109:109- Raw architecture: PAS:113:0.0000000000418:201:89:113#PAS_4:245:2.6e-22:348:109:110#HisKA:362:1.7e-16:424:63:64#HATPase_c:469:1.11e-30:574:109:109
- Domain description: 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001645505::NZ_LXFN01000022.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span143236-145023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_06580RefSeq proteinWP_064475362.1
Context group ID
GCF_001645505::NZ_LXFN01000022.1::G00022Context members
A6280_RS12875
Partner locus tags
A6280_RS12875
Partner old locus tags
A6280_06580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064475362.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PSA1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PSA1_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS12875Primary locus identifier stored in the genes table.
Old locus tagA6280_06580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000022.1Sequence record reported by the local genomic context database.
Genomic interval143 236-145 023 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span143 236-145 023 ntGCF_001645505::NZ_LXFN01000022.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000022.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000022.1All displayed genes belong to this local TCS context.
Neighborhood span143 236-145 023 nt1 788 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 236 nt145 023 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A6280_RS12875GCF_001645505#A6280_RS12875
HKClassicCurrent focus
143 236-145 023 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS12875The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1080680
Simplified PFAM architecture for HKOC_1080680
PFAM domain coverage: 356 / 595 aa (59.8%)
1 aa595 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[113-198] | PAS_4[245-348] | HisKA[364-424] | HATPase_c[469-573]
- Domain count: 4
- Matched identifier: HKOC_1080680
- Positioned domains: PAS 113-198 ; PAS_4 245-348 ; HisKA 364-424 ; HATPase_c 469-573
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS12875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key