1 HAMP#1
63-130 aa · 68 aa · 18.6% of protein
Raw token
HAMP:63:0.000000743:130:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A6280_RS04795
Histidine kinase, Classic
Bacillus wiedmannii · GCF_001645505
ClassHKTypeClassicLength365 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001645505#A6280_RS04795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length365 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 365 aa (67.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa365 aa
Domain-by-domain annotation3 items
2 HisKA#2
141-208 aa · 68 aa · 18.6% of protein
Raw token
HisKA:141:0.00000000000412:208:68:643 HATPase_c#3
253-364 aa · 112 aa · 30.7% of protein
Raw token
HATPase_c:253:3.76e-26:364:113:109- Raw architecture: HAMP:63:0.000000743:130:68:69#HisKA:141:0.00000000000412:208:68:64#HATPase_c:253:3.76e-26:364:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001645505::NZ_LXFN01000011.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30001-31789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA6280_00135RefSeq proteinWP_064474443.1
Context group ID
GCF_001645505::NZ_LXFN01000011.1::G00001Context members
A6280_RS04790A6280_RS04795
Partner locus tags
A6280_RS04790A6280_RS04795
Partner old locus tags
A6280_00130A6280_00135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064474443.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PU47Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PU47_9BACIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA6280_RS04795Primary locus identifier stored in the genes table.
Old locus tagA6280_00135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LXFN01000011.1Sequence record reported by the local genomic context database.
Genomic interval30 692-31 789 nt1 098 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 001-31 789 ntGCF_001645505::NZ_LXFN01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001645505::NZ_LXFN01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LXFN01000011.1All displayed genes belong to this local TCS context.
Neighborhood span30 001-31 789 nt1 789 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 001 nt31 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A6280_RS04790GCF_001645505#A6280_RS04790
RROmpR
30 001-30 699 nt · Forward (+)
A6280_RS04795GCF_001645505#A6280_RS04795
HKClassicCurrent focus
30 692-31 789 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS04795The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2719220
Simplified PFAM architecture for HKOC_2719220
PFAM domain coverage: 223 / 365 aa (61.1%)
1 aa365 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-129] | HisKA[142-207] | HATPase_c[253-363]
- Domain count: 3
- Matched identifier: HKOC_2719220
- Positioned domains: HAMP 84-129 ; HisKA 142-207 ; HATPase_c 253-363
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS04795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_001645505
AssemblyASM164550v1 · Contighaploid
Genome composition5 617 559 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 127 · HK 67 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key