1 HAMP#1
59-127 aa · 69 aa · 19.2% of protein
Raw token
HAMP:59:0.0000000734:127:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS17445
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619505#B4117_RS17445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 360 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation3 items
2 HisKA#2
139-202 aa · 64 aa · 17.8% of protein
Raw token
HisKA:139:0.00000000000000576:202:64:643 HATPase_c#3
251-349 aa · 99 aa · 27.5% of protein
Raw token
HATPase_c:251:5.41e-16:349:99:109- Raw architecture: HAMP:59:0.0000000734:127:69:69#HisKA:139:0.00000000000000576:202:64:64#HATPase_c:251:5.41e-16:349:99:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619505::NZ_LJKG01000063.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29541-31306Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_3614RefSeq proteinWP_002127443.1
Context group ID
GCF_001619505::NZ_LJKG01000063.1::G00041Context members
B4117_RS17440B4117_RS17445
Partner locus tags
B4117_RS17440B4117_RS17445
Partner old locus tags
B4117_3613B4117_3614
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002127443.1Primary protein accession used for annex mappings.
UniProt accessionA9VFY9Primary UniProt accession resolved in the annex database.
UniProt IDA9VFY9_BACMKDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS17445Primary locus identifier stored in the genes table.
Old locus tagB4117_3614Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000063.1Sequence record reported by the local genomic context database.
Genomic interval30 224-31 306 nt1 083 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 541-31 306 ntGCF_001619505::NZ_LJKG01000063.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000063.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000063.1All displayed genes belong to this local TCS context.
Neighborhood span29 541-31 306 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 541 nt31 306 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4117_RS17440GCF_001619505#B4117_RS17440
RROmpR
29 541-30 227 nt · Forward (+)
B4117_RS17445GCF_001619505#B4117_RS17445
HKClassicCurrent focus
30 224-31 306 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000018825#BCERKBAB4_RS11800Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2746970
Simplified PFAM architecture for HKOC_2746970
PFAM domain coverage: 204 / 360 aa (56.7%)
1 aa360 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[84-126] | HisKA[139-202] | HATPase_c[252-348]
- Domain count: 3
- Matched identifier: HKOC_2746970
- Positioned domains: HAMP 84-126 ; HisKA 139-202 ; HATPase_c 252-348
Cluster members and taxonomy
Representative gene: GCF_000018825#BCERKBAB4_RS11800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key