1 HisKA#1
117-169 aa · 53 aa · 16.2% of protein
Raw token
HisKA:117:0.000000343:169:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS17400
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength328 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619505#B4117_RS17400Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length328 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 328 aa (49.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa328 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-324 aa · 110 aa · 33.5% of protein
Raw token
HATPase_c:215:5.19e-25:324:110:109- Raw architecture: HisKA:117:0.000000343:169:59:64#HATPase_c:215:5.19e-25:324:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619505::NZ_LJKG01000063.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17632-19322Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_3604RefSeq proteinWP_002127431.1
Context group ID
GCF_001619505::NZ_LJKG01000063.1::G00040Context members
B4117_RS17395B4117_RS17400
Partner locus tags
B4117_RS17395B4117_RS17400
Partner old locus tags
B4117_3603B4117_3604
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002127431.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9T877Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9T877_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS17400Primary locus identifier stored in the genes table.
Old locus tagB4117_3604Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000063.1Sequence record reported by the local genomic context database.
Genomic interval18 336-19 322 nt987 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 632-19 322 ntGCF_001619505::NZ_LJKG01000063.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000063.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000063.1All displayed genes belong to this local TCS context.
Neighborhood span17 632-19 322 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 632 nt19 322 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4117_RS17395GCF_001619505#B4117_RS17395
RROmpR
17 632-18 336 nt · Forward (+)
B4117_RS17400GCF_001619505#B4117_RS17400
HKClassicCurrent focus
18 336-19 322 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290695#IKM_RS15195Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2859549
Simplified PFAM architecture for HKOC_2859549
PFAM domain coverage: 110 / 328 aa (33.5%)
1 aa328 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[216-325]
- Domain count: 1
- Matched identifier: HKOC_2859549
- Positioned domains: HATPase_c 216-325
Cluster members and taxonomy
Representative gene: GCF_000290695#IKM_RS15195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key