1 PAS_9#1
92-185 aa · 94 aa · 22.2% of protein
Raw token
PAS_9:92:0.0000000000128:185:98:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS15265
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength423 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619505#B4117_RS15265Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 423 aa (60.8%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation3 items
2 HisKA#2
200-259 aa · 60 aa · 14.2% of protein
Raw token
HisKA:200:0.0000000000194:259:60:643 HATPase_c#3
309-411 aa · 103 aa · 24.3% of protein
Raw token
HATPase_c:309:3.06e-26:411:107:109- Raw architecture: PAS_9:92:0.0000000000128:185:98:102#HisKA:200:0.0000000000194:259:60:64#HATPase_c:309:3.06e-26:411:107:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619505::NZ_LJKG01000058.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span292225-293496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_3147RefSeq proteinWP_063226117.1
Context group ID
GCF_001619505::NZ_LJKG01000058.1::G00007Context members
B4117_RS15265
Partner locus tags
B4117_RS15265
Partner old locus tags
B4117_3147
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063226117.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS15265Primary locus identifier stored in the genes table.
Old locus tagB4117_3147Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000058.1Sequence record reported by the local genomic context database.
Genomic interval292 225-293 496 nt1 272 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span292 225-293 496 ntGCF_001619505::NZ_LJKG01000058.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000058.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000058.1All displayed genes belong to this local TCS context.
Neighborhood span292 225-293 496 nt1 272 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
292 225 nt293 496 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4117_RS15265GCF_001619505#B4117_RS15265
HKClassicCurrent focus
292 225-293 496 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619505#B4117_RS15265The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2236514
Simplified PFAM architecture for HKOC_2236514
PFAM domain coverage: 255 / 423 aa (60.3%)
1 aa423 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[95-184] | HisKA[200-260] | HATPase_c[309-412]
- Domain count: 3
- Matched identifier: HKOC_2236514
- Positioned domains: PAS_9 95-184 ; HisKA 200-260 ; HATPase_c 309-412
Cluster members and taxonomy
Representative gene: GCF_001619505#B4117_RS15265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key