1 HisKA#1
193-248 aa · 56 aa · 13.7% of protein
Raw token
HisKA:193:0.000000000431:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS11665
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619505#B4117_RS11665Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 409 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
296-401 aa · 106 aa · 25.9% of protein
Raw token
HATPase_c:296:4.46e-18:401:109:109- Raw architecture: HisKA:193:0.000000000431:248:57:64#HATPase_c:296:4.46e-18:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619505::NZ_LJKG01000052.1::G00067
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span77160-78389Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_2403RefSeq proteinWP_002129551.1
Context group ID
GCF_001619505::NZ_LJKG01000052.1::G00067Context members
B4117_RS11665
Partner locus tags
B4117_RS11665
Partner old locus tags
B4117_2403
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002129551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS11665Primary locus identifier stored in the genes table.
Old locus tagB4117_2403Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000052.1Sequence record reported by the local genomic context database.
Genomic interval77 160-78 389 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 160-78 389 ntGCF_001619505::NZ_LJKG01000052.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000052.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000052.1All displayed genes belong to this local TCS context.
Neighborhood span77 160-78 389 nt1 230 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 160 nt78 389 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4117_RS11665GCF_001619505#B4117_RS11665
HKClassicCurrent focus
77 160-78 389 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS03940Use this link to inspect the representative gene detail.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2362854
Simplified PFAM architecture for HKOC_2362854
PFAM domain coverage: 318 / 409 aa (77.8%)
1 aa409 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-400]
- Domain count: 3
- Matched identifier: HKOC_2362854
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-400
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS03940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key