1 PAS#1
111-200 aa · 90 aa · 15.7% of protein
Raw token
PAS:111:0.000000000605:200:90:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS08850
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength574 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619505#B4117_RS08850Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PASPAS_4HisKAHATPase_c
Protein length574 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage357 / 574 aa (62.2%)Merged over positioned domains only.
Domain description1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa574 aa
Domain-by-domain annotation4 items
2 PAS_4#2
243-346 aa · 104 aa · 18.1% of protein
Raw token
PAS_4:243:0.0000000000000139:346:109:1103 HisKA#3
362-421 aa · 60 aa · 10.5% of protein
Raw token
HisKA:362:0.00000000000000227:421:60:644 HATPase_c#4
468-570 aa · 103 aa · 17.9% of protein
Raw token
HATPase_c:468:1.3e-27:570:106:109- Raw architecture: PAS:111:0.000000000605:200:90:113#PAS_4:243:0.0000000000000139:346:109:110#HisKA:362:0.00000000000000227:421:60:64#HATPase_c:468:1.3e-27:570:106:109
- Domain description: 1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619505::NZ_LJKG01000032.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14316-16040Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_1836RefSeq proteinWP_063225901.1
Context group ID
GCF_001619505::NZ_LJKG01000032.1::G00055Context members
B4117_RS08850
Partner locus tags
B4117_RS08850
Partner old locus tags
B4117_1836
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063225901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS08850Primary locus identifier stored in the genes table.
Old locus tagB4117_1836Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000032.1Sequence record reported by the local genomic context database.
Genomic interval14 316-16 040 nt1 725 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 316-16 040 ntGCF_001619505::NZ_LJKG01000032.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000032.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000032.1All displayed genes belong to this local TCS context.
Neighborhood span14 316-16 040 nt1 725 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 316 nt16 040 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4117_RS08850GCF_001619505#B4117_RS08850
HKClassicCurrent focus
14 316-16 040 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619505#B4117_RS08850The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1193389
Simplified PFAM architecture for HKOC_1193389
PFAM domain coverage: 351 / 574 aa (61.1%)
1 aa574 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[112-195] | PAS_4[243-346] | HisKA[362-421] | HATPase_c[468-570]
- Domain count: 4
- Matched identifier: HKOC_1193389
- Positioned domains: PAS 112-195 ; PAS_4 243-346 ; HisKA 362-421 ; HATPase_c 468-570
Cluster members and taxonomy
Representative gene: GCF_001619505#B4117_RS08850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key