1 HAMP#1
168-237 aa · 70 aa · 14.5% of protein
Raw token
HAMP:168:0.00000438:237:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS08550
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619505#B4117_RS08550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 483 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-326 aa · 65 aa · 13.5% of protein
Raw token
HisKA:262:0.000000000000239:326:65:643 HATPase_c#3
372-482 aa · 111 aa · 23.0% of protein
Raw token
HATPase_c:372:7.85e-30:482:111:109- Raw architecture: HAMP:168:0.00000438:237:70:69#HisKA:262:0.000000000000239:326:65:64#HATPase_c:372:7.85e-30:482:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619505::NZ_LJKG01000027.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2357-4493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_1777RefSeq proteinWP_081214494.1
Context group ID
GCF_001619505::NZ_LJKG01000027.1::G00064Context members
B4117_RS08550B4117_RS08555
Partner locus tags
B4117_RS08550B4117_RS08555
Partner old locus tags
B4117_1777B4117_1778
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081214494.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS08550Primary locus identifier stored in the genes table.
Old locus tagB4117_1777Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000027.1Sequence record reported by the local genomic context database.
Genomic interval2 357-3 808 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 357-4 493 ntGCF_001619505::NZ_LJKG01000027.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000027.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000027.1All displayed genes belong to this local TCS context.
Neighborhood span2 357-4 493 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 357 nt4 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4117_RS08550GCF_001619505#B4117_RS08550
HKClassicCurrent focus
2 357-3 808 nt · Reverse (-)
B4117_RS08555GCF_001619505#B4117_RS08555
RROmpR
3 798-4 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619505#B4117_RS08550The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1595124
Simplified PFAM architecture for HKOC_1595124
PFAM domain coverage: 175 / 483 aa (36.2%)
1 aa483 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[263-326] | HATPase_c[372-482]
- Domain count: 2
- Matched identifier: HKOC_1595124
- Positioned domains: HisKA 263-326 ; HATPase_c 372-482
Cluster members and taxonomy
Representative gene: GCF_001619505#B4117_RS08550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key