1 HisKA_3#1
178-241 aa · 64 aa · 17.0% of protein
Raw token
HisKA_3:178:4.04e-23:241:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4117_RS00485
Histidine kinase, Classic
Bacillus mycoides · GCF_001619505
ClassHKTypeClassicLength376 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619505#B4117_RS00485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length376 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 376 aa (39.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa376 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
282-367 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:282:0.000000000577:367:104:109- Raw architecture: HisKA_3:178:4.04e-23:241:64:68#HATPase_c:282:0.000000000577:367:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619505::NZ_LJKG01000001.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98959-100688Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4117_0096RefSeq proteinWP_063225624.1
Context group ID
GCF_001619505::NZ_LJKG01000001.1::G00026Context members
B4117_RS00480B4117_RS00485
Partner locus tags
B4117_RS00480B4117_RS00485
Partner old locus tags
B4117_0095B4117_0096
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063225624.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4117_RS00485Primary locus identifier stored in the genes table.
Old locus tagB4117_0096Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKG01000001.1Sequence record reported by the local genomic context database.
Genomic interval99 558-100 688 nt1 131 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 959-100 688 ntGCF_001619505::NZ_LJKG01000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619505::NZ_LJKG01000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span98 959-100 688 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 959 nt100 688 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4117_RS00480GCF_001619505#B4117_RS00480
RRNarL
98 959-99 561 nt · Reverse (-)
B4117_RS00485GCF_001619505#B4117_RS00485
HKClassicCurrent focus
99 558-100 688 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619505#B4117_RS00485The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2642452
Simplified PFAM architecture for HKOC_2642452
PFAM domain coverage: 295 / 376 aa (78.5%)
1 aa376 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[4-149] | HisKA_3[178-241] | HATPase_c[280-364]
- Domain count: 3
- Matched identifier: HKOC_2642452
- Positioned domains: DesK_N 4-149 ; HisKA_3 178-241 ; HATPase_c 280-364
Cluster members and taxonomy
Representative gene: GCF_001619505#B4117_RS00485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001619505
AssemblyASM161950v1 · Scaffoldhaploid
Genome composition5 732 453 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 128 · HK 68 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key