1 HAMP#1
62-129 aa · 68 aa · 19.0% of protein
Raw token
HAMP:62:0.0000000183:129:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS17775
Histidine kinase, Classic
Bacillus cereus · GCF_001619355
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619355#B4088_RS17775Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 357 aa (69.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-199 aa · 67 aa · 18.8% of protein
Raw token
HisKA:133:0.0000000000000944:199:67:643 HATPase_c#3
243-355 aa · 113 aa · 31.7% of protein
Raw token
HATPase_c:243:1.48e-31:355:113:109- Raw architecture: HAMP:62:0.0000000183:129:68:69#HisKA:133:0.0000000000000944:199:67:64#HATPase_c:243:1.48e-31:355:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619355::NZ_LJKE01000062.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46763-48510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_3635RefSeq proteinWP_063261817.1
Context group ID
GCF_001619355::NZ_LJKE01000062.1::G00025Context members
B4088_RS17770B4088_RS17775
Partner locus tags
B4088_RS17770B4088_RS17775
Partner old locus tags
B4088_3634B4088_3635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_063261817.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS17775Primary locus identifier stored in the genes table.
Old locus tagB4088_3635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000062.1Sequence record reported by the local genomic context database.
Genomic interval47 437-48 510 nt1 074 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 763-48 510 ntGCF_001619355::NZ_LJKE01000062.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000062.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000062.1All displayed genes belong to this local TCS context.
Neighborhood span46 763-48 510 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 763 nt48 510 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4088_RS17770GCF_001619355#B4088_RS17770
RROmpR
46 763-47 440 nt · Forward (+)
B4088_RS17775GCF_001619355#B4088_RS17775
HKClassicCurrent focus
47 437-48 510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS17775The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765782
Simplified PFAM architecture for HKOC_2765782
PFAM domain coverage: 176 / 357 aa (49.3%)
1 aa357 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-198] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2765782
- Positioned domains: HisKA 133-198 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS17775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key