1 HisKA#1
191-258 aa · 68 aa · 16.3% of protein
Raw token
HisKA:191:0.0000000000000452:258:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS16215
Histidine kinase, Classic
Bacillus cereus · GCF_001619355
ClassHKTypeClassicLength416 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619355#B4088_RS16215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length416 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 416 aa (43.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa416 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
303-414 aa · 112 aa · 26.9% of protein
Raw token
HATPase_c:303:2.21e-29:414:112:109- Raw architecture: HisKA:191:0.0000000000000452:258:68:64#HATPase_c:303:2.21e-29:414:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619355::NZ_LJKE01000052.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span127483-129401Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_3314RefSeq proteinWP_080467663.1
Context group ID
GCF_001619355::NZ_LJKE01000052.1::G00012Context members
B4088_RS16215B4088_RS16220
Partner locus tags
B4088_RS16215B4088_RS16220
Partner old locus tags
B4088_3314B4088_3315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080467663.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS16215Primary locus identifier stored in the genes table.
Old locus tagB4088_3314Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000052.1Sequence record reported by the local genomic context database.
Genomic interval127 483-128 733 nt1 251 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span127 483-129 401 ntGCF_001619355::NZ_LJKE01000052.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000052.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000052.1All displayed genes belong to this local TCS context.
Neighborhood span127 483-129 401 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 483 nt129 401 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4088_RS16215GCF_001619355#B4088_RS16215
HKClassicCurrent focus
127 483-128 733 nt · Reverse (-)
B4088_RS16220GCF_001619355#B4088_RS16220
RROmpR
128 730-129 401 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS16215The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2303117
Simplified PFAM architecture for HKOC_2303117
PFAM domain coverage: 177 / 416 aa (42.5%)
1 aa416 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[192-257] | HATPase_c[303-413]
- Domain count: 2
- Matched identifier: HKOC_2303117
- Positioned domains: HisKA 192-257 ; HATPase_c 303-413
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS16215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key