1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:7.68e-20:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS08340
Response regulator OmpR family
Bacillus cereus · GCF_001619355
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619355#B4088_RS08340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:150:1.05e-22:225:77:77- Raw architecture: Response_reg:4:7.68e-20:113:111:111#Trans_reg_C:150:1.05e-22:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619355::NZ_LJKE01000037.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9627-11314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_1718RefSeq proteinWP_061680220.1
Context group ID
GCF_001619355::NZ_LJKE01000037.1::G00053Context members
B4088_RS08340B4088_RS08345
Partner locus tags
B4088_RS08340B4088_RS08345
Partner old locus tags
B4088_1718B4088_1719
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_061680220.1Primary protein accession used for annex mappings.
UniProt accessionA0A164PSV2Primary UniProt accession resolved in the annex database.
UniProt IDA0A164PSV2_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS08340Primary locus identifier stored in the genes table.
Old locus tagB4088_1718Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000037.1Sequence record reported by the local genomic context database.
Genomic interval9 627-10 334 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 627-11 314 ntGCF_001619355::NZ_LJKE01000037.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000037.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000037.1All displayed genes belong to this local TCS context.
Neighborhood span9 627-11 314 nt1 688 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 627 nt11 314 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4088_RS08340GCF_001619355#B4088_RS08340
RROmpRCurrent focus
9 627-10 334 nt · Forward (+)
B4088_RS08345GCF_001619355#B4088_RS08345
HKClassic
10 331-11 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS08340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1021073
Simplified PFAM architecture for RROC_1021073
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1021073
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS08340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key