1 Response_reg#1
8-114 aa · 107 aa · 29.2% of protein
Raw token
Response_reg:8:2.91e-20:114:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS04680
Response regulator, CheB family
Bacillus cereus · GCF_001619355
ClassRRTypeCheBLength366 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619355#B4088_RS04680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage289 / 366 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
171-352 aa · 182 aa · 49.7% of protein
Raw token
CheB_methylest:171:9.45e-63:352:182:177- Raw architecture: Response_reg:8:2.91e-20:114:108:111#CheB_methylest:171:9.45e-63:352:182:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619355::NZ_LJKE01000020.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75155-76255Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_0960RefSeq proteinWP_063260124.1
Context group ID
GCF_001619355::NZ_LJKE01000020.1::G00013Context members
B4088_RS04680
Partner locus tags
B4088_RS04680
Partner old locus tags
B4088_0960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063260124.1Primary protein accession used for annex mappings.
UniProt accessionA0A164QF57Primary UniProt accession resolved in the annex database.
UniProt IDA0A164QF57_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS04680Primary locus identifier stored in the genes table.
Old locus tagB4088_0960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000020.1Sequence record reported by the local genomic context database.
Genomic interval75 155-76 255 nt1 101 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 155-76 255 ntGCF_001619355::NZ_LJKE01000020.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000020.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000020.1All displayed genes belong to this local TCS context.
Neighborhood span75 155-76 255 nt1 101 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 155 nt76 255 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4088_RS04680GCF_001619355#B4088_RS04680
RRCheBCurrent focus
75 155-76 255 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS04680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0448290
Simplified PFAM architecture for RROC_0448290
PFAM domain coverage: 292 / 366 aa (79.8%)
1 aa366 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[8-118] | CheB_methylest[171-351]
- Domain count: 2
- Matched identifier: RROC_0448290
- Positioned domains: Response_reg 8-118 ; Response_reg 8-118 ; CheB_methylest 171-351 ; CheB_methylest 171-351
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS04680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key