1 Response_reg#1
3-123 aa · 121 aa · 31.8% of protein
Raw token
Response_reg:3:1.3e-30:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4088_RS04210
Response regulator, RsbU family
Bacillus cereus · GCF_001619355
ClassRRTypeRsbULength380 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619355#B4088_RS04210Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpoIIE
Protein length380 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage308 / 380 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 SpoIIESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa380 aa
Domain-by-domain annotation2 items
2 SpoIIE#2
190-376 aa · 187 aa · 49.2% of protein
Raw token
SpoIIE:190:4.77e-44:376:193:190- Raw architecture: Response_reg:3:1.3e-30:123:121:111#SpoIIE:190:4.77e-44:376:193:190
- Domain description: 1 Response_reg,1 SpoIIE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619355::NZ_LJKE01000019.1::G00065
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17345-18487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4088_0860RefSeq proteinWP_063260032.1
Context group ID
GCF_001619355::NZ_LJKE01000019.1::G00065Context members
B4088_RS04210
Partner locus tags
B4088_RS04210
Partner old locus tags
B4088_0860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063260032.1Primary protein accession used for annex mappings.
UniProt accessionA0A164QFX5Primary UniProt accession resolved in the annex database.
UniProt IDA0A164QFX5_BACCEDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4088_RS04210Primary locus identifier stored in the genes table.
Old locus tagB4088_0860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKE01000019.1Sequence record reported by the local genomic context database.
Genomic interval17 345-18 487 nt1 143 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 345-18 487 ntGCF_001619355::NZ_LJKE01000019.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619355::NZ_LJKE01000019.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKE01000019.1All displayed genes belong to this local TCS context.
Neighborhood span17 345-18 487 nt1 143 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 345 nt18 487 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4088_RS04210GCF_001619355#B4088_RS04210
RRRsbUCurrent focus
17 345-18 487 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619355#B4088_RS04210The current gene is the representative for this cluster.
PFAM architectureResponse_reg + SpoIIE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0422488
Simplified PFAM architecture for RROC_0422488
PFAM domain coverage: 307 / 380 aa (80.8%)
1 aa380 aa
Response_regSpoIIE
- Simplified architecture: Response_reg + SpoIIE
- Raw architecture: Response_reg[3-122] | SpoIIE[190-376]
- Domain count: 2
- Matched identifier: RROC_0422488
- Positioned domains: Response_reg 3-122 ; Response_reg 3-122 ; SpoIIE 190-376 ; SpoIIE 190-376
Cluster members and taxonomy
Representative gene: GCF_001619355#B4088_RS04210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619355
AssemblyASM161935v1 · Scaffoldhaploid
Genome composition6 432 609 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 109 · HK 56 · RR 53CheA 2 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key