1 Hpt#1
4-96 aa · 93 aa · 13.9% of protein
Raw token
Hpt:4:8.74e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A3782_RS10845
Histidine kinase, CheA
Bacillus sp. GZT · GCF_001611175
ClassHKTypeCheALength670 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001611175#A3782_RS10845Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length670 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 670 aa (63.6%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa670 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
287-346 aa · 60 aa · 9.0% of protein
Raw token
H-kinase_dim:287:0.00000000572:346:67:673 HATPase_c#3
394-533 aa · 140 aa · 20.9% of protein
Raw token
HATPase_c:394:1.38e-17:533:140:1094 CheW#4
538-670 aa · 133 aa · 19.9% of protein
Raw token
CheW:538:1.53e-21:670:139:138- Raw architecture: Hpt:4:8.74e-17:96:93:84#H-kinase_dim:287:0.00000000572:346:67:67#HATPase_c:394:1.38e-17:533:140:109#CheW:538:1.53e-21:670:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001611175::NZ_LVVJ01000012.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span160082-162591Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA3782_03570RefSeq proteinWP_062922179.1
Context group ID
GCF_001611175::NZ_LVVJ01000012.1::G00030Context members
A3782_RS10840A3782_RS10845
Partner locus tags
A3782_RS10840A3782_RS10845
Partner old locus tags
A3782_03565A3782_03570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_062922179.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA3782_RS10845Primary locus identifier stored in the genes table.
Old locus tagA3782_03570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LVVJ01000012.1Sequence record reported by the local genomic context database.
Genomic interval160 579-162 591 nt2 013 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span160 082-162 591 ntGCF_001611175::NZ_LVVJ01000012.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001611175::NZ_LVVJ01000012.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LVVJ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span160 082-162 591 nt2 510 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
160 082 nt162 591 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A3782_RS10840GCF_001611175#A3782_RS10840
RRCheY
160 082-160 450 nt · Forward (+)
A3782_RS10845GCF_001611175#A3782_RS10845
HKCheACurrent focus
160 579-162 591 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001611175#A3782_RS10845The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0845548
Simplified PFAM architecture for HKOC_0845548
PFAM domain coverage: 509 / 670 aa (76.0%)
1 aa670 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[287-345] | HATPase_c[394-533] | CheW[539-670]
- Domain count: 5
- Matched identifier: HKOC_0845548
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 287-345 ; HATPase_c 394-533 ; CheW 539-670
Cluster members and taxonomy
Representative gene: GCF_001611175#A3782_RS10845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 936 600 · GCF_001611175
AssemblyASM161117v1 · Contighaploid
Genome composition5 188 788 bp · 35,0% GCBacillus sp. GZT
Signal transduction countsGenes 107 · HK 56 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key