1 HisKA#1
286-348 aa · 63 aa · 12.7% of protein
Raw token
HisKA:286:0.0000000000000143:348:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A3782_RS05120
Histidine kinase, Classic
Bacillus sp. GZT · GCF_001611175
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001611175#A3782_RS05120Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 498 aa (33.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
394-497 aa · 104 aa · 20.9% of protein
Raw token
HATPase_c:394:4.61e-29:497:107:109- Raw architecture: HisKA:286:0.0000000000000143:348:63:64#HATPase_c:394:4.61e-29:497:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001611175::NZ_LVVJ01000005.1::G00010
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span61523-63019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA3782_15410RefSeq proteinWP_062921664.1
Context group ID
GCF_001611175::NZ_LVVJ01000005.1::G00010Context members
A3782_RS05120
Partner locus tags
A3782_RS05120
Partner old locus tags
A3782_15410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_062921664.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA3782_RS05120Primary locus identifier stored in the genes table.
Old locus tagA3782_15410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LVVJ01000005.1Sequence record reported by the local genomic context database.
Genomic interval61 523-63 019 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 523-63 019 ntGCF_001611175::NZ_LVVJ01000005.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001611175::NZ_LVVJ01000005.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LVVJ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span61 523-63 019 nt1 497 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 523 nt63 019 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A3782_RS05120GCF_001611175#A3782_RS05120
HKClassicCurrent focus
61 523-63 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001611175#A3782_RS05120The current gene is the representative for this cluster.
PFAM architectureDUF3149 + dCache_1 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487729
Simplified PFAM architecture for HKOC_1487729
PFAM domain coverage: 350 / 498 aa (70.3%)
1 aa498 aa
DUF3149dCache_1HisKAHATPase_c
- Simplified architecture: DUF3149 + dCache_1 + HisKA + HATPase_c
- Raw architecture: DUF3149[1-38] | dCache_1[61-206] | HisKA[286-347] | HATPase_c[393-496]
- Domain count: 4
- Matched identifier: HKOC_1487729
- Positioned domains: DUF3149 1-38 ; dCache_1 61-206 ; HisKA 286-347 ; HATPase_c 393-496
Cluster members and taxonomy
Representative gene: GCF_001611175#A3782_RS05120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 936 600 · GCF_001611175
AssemblyASM161117v1 · Contighaploid
Genome composition5 188 788 bp · 35,0% GCBacillus sp. GZT
Signal transduction countsGenes 107 · HK 56 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key