1 HAMP#1
166-232 aa · 67 aa · 14.8% of protein
Raw token
HAMP:166:0.000000000000115:232:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A3782_RS03750
Histidine kinase, Classic
Bacillus sp. GZT · GCF_001611175
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001611175#A3782_RS03750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 453 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-303 aa · 68 aa · 15.0% of protein
Raw token
HisKA:236:9.96e-18:303:68:643 HATPase_c#3
347-453 aa · 107 aa · 23.6% of protein
Raw token
HATPase_c:347:3.64e-31:453:108:109- Raw architecture: HAMP:166:0.000000000000115:232:67:69#HisKA:236:9.96e-18:303:68:64#HATPase_c:347:3.64e-31:453:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001611175::NZ_LVVJ01000003.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8899-10946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA3782_14040RefSeq proteinWP_062921538.1
Context group ID
GCF_001611175::NZ_LVVJ01000003.1::G00008Context members
A3782_RS03745A3782_RS03750
Partner locus tags
A3782_RS03745A3782_RS03750
Partner old locus tags
A3782_14035A3782_14040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_062921538.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA3782_RS03750Primary locus identifier stored in the genes table.
Old locus tagA3782_14040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LVVJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval9 585-10 946 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 899-10 946 ntGCF_001611175::NZ_LVVJ01000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001611175::NZ_LVVJ01000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LVVJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span8 899-10 946 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 899 nt10 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A3782_RS03745GCF_001611175#A3782_RS03745
RROmpR
8 899-9 588 nt · Forward (+)
A3782_RS03750GCF_001611175#A3782_RS03750
HKClassicCurrent focus
9 585-10 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001611175#A3782_RS03750The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1926594
Simplified PFAM architecture for HKOC_1926594
PFAM domain coverage: 225 / 453 aa (49.7%)
1 aa453 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-231] | HisKA[236-302] | HATPase_c[347-453]
- Domain count: 3
- Matched identifier: HKOC_1926594
- Positioned domains: HAMP 181-231 ; HisKA 236-302 ; HATPase_c 347-453
Cluster members and taxonomy
Representative gene: GCF_001611175#A3782_RS03750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 936 600 · GCF_001611175
AssemblyASM161117v1 · Contighaploid
Genome composition5 188 788 bp · 35,0% GCBacillus sp. GZT
Signal transduction countsGenes 107 · HK 56 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key