1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:2.86e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A3782_RS03745
Response regulator OmpR family
Bacillus sp. GZT · GCF_001611175
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001611175#A3782_RS03745Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 229 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:148:6.91e-31:224:77:77- Raw architecture: Response_reg:4:2.86e-38:114:111:111#Trans_reg_C:148:6.91e-31:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001611175::NZ_LVVJ01000003.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8899-10946Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA3782_14035RefSeq proteinWP_062921537.1
Context group ID
GCF_001611175::NZ_LVVJ01000003.1::G00008Context members
A3782_RS03745A3782_RS03750
Partner locus tags
A3782_RS03745A3782_RS03750
Partner old locus tags
A3782_14035A3782_14040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_062921537.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA3782_RS03745Primary locus identifier stored in the genes table.
Old locus tagA3782_14035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LVVJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval8 899-9 588 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 899-10 946 ntGCF_001611175::NZ_LVVJ01000003.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001611175::NZ_LVVJ01000003.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LVVJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span8 899-10 946 nt2 048 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 899 nt10 946 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A3782_RS03745GCF_001611175#A3782_RS03745
RROmpRCurrent focus
8 899-9 588 nt · Forward (+)
A3782_RS03750GCF_001611175#A3782_RS03750
HKClassic
9 585-10 946 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001611175#A3782_RS03745The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1254808
Simplified PFAM architecture for RROC_1254808
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1254808
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_001611175#A3782_RS03745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 936 600 · GCF_001611175
AssemblyASM161117v1 · Contighaploid
Genome composition5 188 788 bp · 35,0% GCBacillus sp. GZT
Signal transduction countsGenes 107 · HK 56 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key