1 Response_reg#1
5-115 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:5:2.73e-29:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AT266_RS03835
Response regulator OmpR family
Bacillus cereus · GCF_001583685
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001583685#AT266_RS03835Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:150:2.57e-23:226:77:77- Raw architecture: Response_reg:5:2.73e-29:115:111:111#Trans_reg_C:150:2.57e-23:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001583685::NZ_LOMW01000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52916-54858Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAT266_00275RefSeq proteinWP_001035094.1
Context group ID
GCF_001583685::NZ_LOMW01000002.1::G00003Context members
AT266_RS03835AT266_RS03840
Partner locus tags
AT266_RS03835AT266_RS03840
Partner old locus tags
AT266_00275AT266_00280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001035094.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6MIU7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6MIU7_BACTJDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAT266_RS03835Primary locus identifier stored in the genes table.
Old locus tagAT266_00275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LOMW01000002.1Sequence record reported by the local genomic context database.
Genomic interval52 916-53 614 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 916-54 858 ntGCF_001583685::NZ_LOMW01000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001583685::NZ_LOMW01000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LOMW01000002.1All displayed genes belong to this local TCS context.
Neighborhood span52 916-54 858 nt1 943 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 916 nt54 858 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AT266_RS03835GCF_001583685#AT266_RS03835
RROmpRCurrent focus
52 916-53 614 nt · Forward (+)
AT266_RS03840GCF_001583685#AT266_RS03840
HKClassic
53 623-54 858 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290775#IK7_RS13395Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1120653
Simplified PFAM architecture for RROC_1120653
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1120653
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000290775#IK7_RS13395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001583685
AssemblyASM158368v1 · Contighaploid
Genome composition5 725 783 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 115 · HK 62 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key