1 HisKA_3#1
242-300 aa · 59 aa · 7.2% of protein
Raw token
HisKA_3:242:4.63e-16:300:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF3231_RS09495
Histidine kinase, Classic
Bifidobacterium longum · GCF_001546275
ClassHKTypeClassicLength817 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001546275#HMPREF3231_RS09495Stable P2CS identifier used across views.
GenomeGCF_001546275Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length817 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 817 aa (27.2%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
343-434 aa · 92 aa · 11.3% of protein
Raw token
HATPase_c:343:0.000000000000141:434:108:1093 HisKA_3#3
693-763 aa · 71 aa · 8.7% of protein
Raw token
HisKA_3:693:0.0000109:763:71:68- Raw architecture: HisKA_3:242:4.63e-16:300:59:68#HATPase_c:343:0.000000000000141:434:108:109#HisKA_3:693:0.0000109:763:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001546275::NZ_KQ956006.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53885-57250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF3231_02145RefSeq proteinWP_060868252.1
Context group ID
GCF_001546275::NZ_KQ956006.1::G00009Context members
HMPREF3231_RS09495HMPREF3231_RS09500
Partner locus tags
HMPREF3231_RS09495HMPREF3231_RS09500
Partner old locus tags
HMPREF3231_02145HMPREF3231_02146
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060868252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF3231_RS09495Primary locus identifier stored in the genes table.
Old locus tagHMPREF3231_02145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KQ956006.1Sequence record reported by the local genomic context database.
Genomic interval53 885-56 338 nt2 454 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 885-57 250 ntGCF_001546275::NZ_KQ956006.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001546275::NZ_KQ956006.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KQ956006.1All displayed genes belong to this local TCS context.
Neighborhood span53 885-57 250 nt3 366 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 885 nt57 250 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF3231_RS09495GCF_001546275#HMPREF3231_RS09495
HKClassicCurrent focus
53 885-56 338 nt · Forward (+)
HMPREF3231_RS09500GCF_001546275#HMPREF3231_RS09500
RRNarL
56 360-57 250 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001546275#HMPREF3231_RS09495The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0532738
Simplified PFAM architecture for HKOC_0532738
PFAM domain coverage: 409 / 817 aa (50.1%)
1 aa817 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[13-136] | HisKA_3[242-303] | HATPase_c[343-435] | DUF7134[483-612]
- Domain count: 4
- Matched identifier: HKOC_0532738
- Positioned domains: DUF7134 13-136 ; HisKA_3 242-303 ; HATPase_c 343-435 ; DUF7134 483-612
Cluster members and taxonomy
Representative gene: GCF_001546275#HMPREF3231_RS09495
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_001546275#HMPREF3231_RS09495 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_001546275
AssemblyASM154627v1 · Scaffoldhaploid
Genome composition2 372 082 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 19 · HK 10 · RR 9CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key