1 HisKA_3#1
245-307 aa · 63 aa · 7.7% of protein
Raw token
HisKA_3:245:0.00000000000000187:307:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF3193_RS03020
Histidine kinase, Classic
Bifidobacterium breve · GCF_001546235
ClassHKTypeClassicLength822 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001546235#HMPREF3193_RS03020Stable P2CS identifier used across views.
GenomeGCF_001546235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length822 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 822 aa (27.5%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa822 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
348-439 aa · 92 aa · 11.2% of protein
Raw token
HATPase_c:348:0.000000000000304:439:108:1093 HisKA_3#3
698-768 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:698:0.0000106:768:71:68- Raw architecture: HisKA_3:245:0.00000000000000187:307:63:68#HATPase_c:348:0.000000000000304:439:108:109#HisKA_3:698:0.0000106:768:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001546235::NZ_KQ955954.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10460-13756Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF3193_00704RefSeq proteinWP_016463161.1
Context group ID
GCF_001546235::NZ_KQ955954.1::G00005Context members
HMPREF3193_RS03020HMPREF3193_RS03025
Partner locus tags
HMPREF3193_RS03020HMPREF3193_RS03025
Partner old locus tags
HMPREF3193_00704HMPREF3193_00705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016463161.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF3193_RS03020Primary locus identifier stored in the genes table.
Old locus tagHMPREF3193_00704Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KQ955954.1Sequence record reported by the local genomic context database.
Genomic interval10 460-12 928 nt2 469 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 460-13 756 ntGCF_001546235::NZ_KQ955954.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001546235::NZ_KQ955954.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KQ955954.1All displayed genes belong to this local TCS context.
Neighborhood span10 460-13 756 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 460 nt13 756 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF3193_RS03020GCF_001546235#HMPREF3193_RS03020
HKClassicCurrent focus
10 460-12 928 nt · Forward (+)
HMPREF3193_RS03025GCF_001546235#HMPREF3193_RS03025
RRNarL
12 950-13 756 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000411435#HMPREF1482_RS00400Use this link to inspect the representative gene detail.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0527560
Simplified PFAM architecture for HKOC_0527560
PFAM domain coverage: 428 / 822 aa (52.1%)
1 aa822 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[14-155] | HisKA_3[245-308] | HATPase_c[348-438] | DUF7134[486-616]
- Domain count: 4
- Matched identifier: HKOC_0527560
- Positioned domains: DUF7134 14-155 ; HisKA_3 245-308 ; HATPase_c 348-438 ; DUF7134 486-616
Cluster members and taxonomy
Representative gene: GCF_000411435#HMPREF1482_RS00400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 685 · GCF_001546235
AssemblyASM154623v1 · Scaffoldhaploid
Genome composition2 358 436 bp · 58,5% GCBifidobacterium breve
Signal transduction countsGenes 26 · HK 9 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key