1 Response_reg#1
11-120 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:11:7.45e-24:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN51_RS00695
Response regulator OmpR family
Enterococcus faecium · GCF_001543555
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001543555#AWN51_RS00695Stable P2CS identifier used across views.
GenomeGCF_001543555Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:5.49e-28:229:77:77- Raw architecture: Response_reg:11:7.45e-24:120:111:111#Trans_reg_C:153:5.49e-28:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001543555::NZ_LRAS01000019.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span131-2222Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN51_00700RefSeq proteinWP_060775909.1
Context group ID
GCF_001543555::NZ_LRAS01000019.1::G00002Context members
AWN51_RS00690AWN51_RS00695
Partner locus tags
AWN51_RS00690AWN51_RS00695
Partner old locus tags
AWN51_00695AWN51_00700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060775909.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN51_RS00695Primary locus identifier stored in the genes table.
Old locus tagAWN51_00700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAS01000019.1Sequence record reported by the local genomic context database.
Genomic interval1 518-2 222 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span131-2 222 ntGCF_001543555::NZ_LRAS01000019.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543555::NZ_LRAS01000019.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAS01000019.1All displayed genes belong to this local TCS context.
Neighborhood span131-2 222 nt2 092 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
131 nt2 222 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWN51_RS00690GCF_001543555#AWN51_RS00690
HKClassic
131-1 516 nt · Reverse (-)
AWN51_RS00695GCF_001543555#AWN51_RS00695
RROmpRCurrent focus
1 518-2 222 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001543555#AWN51_RS00695The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1051663
Simplified PFAM architecture for RROC_1051663
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-120] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1051663
- Positioned domains: Response_reg 11-120 ; Response_reg 11-120 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_001543555#AWN51_RS00695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543555
AssemblyASM154355v1 · Scaffoldhaploid
Genome composition3 170 658 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 46 · HK 22 · RR 24CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key