1 Response_reg#1
7-116 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:7:5.9e-39:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS23580
Response regulator OmpR family
Bacillus mycoides · GCF_001541985
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001541985#AWW70_RS23580Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.8% of protein
Raw token
Trans_reg_C:156:1.41e-34:233:78:77- Raw architecture: Response_reg:7:5.9e-39:116:111:111#Trans_reg_C:156:1.41e-34:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001541985::NZ_LRPH01000083.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136006-138497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_23625RefSeq proteinWP_002011758.1
Context group ID
GCF_001541985::NZ_LRPH01000083.1::G00068Context members
AWW70_RS23575AWW70_RS23580
Partner locus tags
AWW70_RS23575AWW70_RS23580
Partner old locus tags
AWW70_23620AWW70_23625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002011758.1Primary protein accession used for annex mappings.
UniProt accessionR8HT26Primary UniProt accession resolved in the annex database.
UniProt IDR8HT26_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS23580Primary locus identifier stored in the genes table.
Old locus tagAWW70_23625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000083.1Sequence record reported by the local genomic context database.
Genomic interval137 781-138 497 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 006-138 497 ntGCF_001541985::NZ_LRPH01000083.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000083.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000083.1All displayed genes belong to this local TCS context.
Neighborhood span136 006-138 497 nt2 492 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 006 nt138 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWW70_RS23575GCF_001541985#AWW70_RS23575
HKClassic
136 006-137 781 nt · Reverse (-)
AWW70_RS23580GCF_001541985#AWW70_RS23580
RROmpRCurrent focus
137 781-138 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS05975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932197
Simplified PFAM architecture for RROC_0932197
PFAM domain coverage: 187 / 238 aa (78.6%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0932197
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS05975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key