1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:2.71e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS19320
Response regulator OmpR family
Bacillus mycoides · GCF_001541985
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001541985#AWW70_RS19320Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 221 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-219 aa · 69 aa · 31.2% of protein
Raw token
Trans_reg_C:151:7.21e-29:219:74:77- Raw architecture: Response_reg:6:2.71e-35:115:111:111#Trans_reg_C:151:7.21e-29:219:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001541985::NZ_LRPH01000070.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92545-94687Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_19480RefSeq proteinWP_060751038.1
Context group ID
GCF_001541985::NZ_LRPH01000070.1::G00055Context members
AWW70_RS19320AWW70_RS19325
Partner locus tags
AWW70_RS19320AWW70_RS19325
Partner old locus tags
AWW70_19480AWW70_19485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060751038.1Primary protein accession used for annex mappings.
UniProt accessionA0A109G2T0Primary UniProt accession resolved in the annex database.
UniProt IDA0A109G2T0_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS19320Primary locus identifier stored in the genes table.
Old locus tagAWW70_19480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000070.1Sequence record reported by the local genomic context database.
Genomic interval92 545-93 210 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 545-94 687 ntGCF_001541985::NZ_LRPH01000070.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000070.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000070.1All displayed genes belong to this local TCS context.
Neighborhood span92 545-94 687 nt2 143 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 545 nt94 687 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWW70_RS19320GCF_001541985#AWW70_RS19320
RROmpRCurrent focus
92 545-93 210 nt · Forward (+)
AWW70_RS19325GCF_001541985#AWW70_RS19325
HKClassic
93 224-94 687 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS19320The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1682792
Simplified PFAM architecture for RROC_1682792
PFAM domain coverage: 177 / 221 aa (80.1%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[151-218]
- Domain count: 2
- Matched identifier: RROC_1682792
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 151-218 ; Trans_reg_C 151-218
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS19320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key