1 Response_reg#1
4-115 aa · 112 aa · 47.7% of protein
Raw token
Response_reg:4:8.92e-30:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS16825
Response regulator, unclassified
Bacillus mycoides · GCF_001541985
ClassRRTypeunclassifiedLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001541985#AWW70_RS16825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 235 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:8.92e-30:115:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001541985::NZ_LRPH01000059.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27507-28214Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_17360RefSeq proteinWP_060750776.1
Context group ID
GCF_001541985::NZ_LRPH01000059.1::G00050Context members
AWW70_RS16825
Partner locus tags
AWW70_RS16825
Partner old locus tags
AWW70_17360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060750776.1Primary protein accession used for annex mappings.
UniProt accessionA0A109G5U0Primary UniProt accession resolved in the annex database.
UniProt IDA0A109G5U0_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS16825Primary locus identifier stored in the genes table.
Old locus tagAWW70_17360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000059.1Sequence record reported by the local genomic context database.
Genomic interval27 507-28 214 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 507-28 214 ntGCF_001541985::NZ_LRPH01000059.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000059.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000059.1All displayed genes belong to this local TCS context.
Neighborhood span27 507-28 214 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 507 nt28 214 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWW70_RS16825GCF_001541985#AWW70_RS16825
RRunclassifiedCurrent focus
27 507-28 214 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS16825The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1020787
Simplified PFAM architecture for RROC_1020787
PFAM domain coverage: 112 / 235 aa (47.7%)
1 aa235 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_1020787
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS16825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key