1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.000000282:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS13345
Histidine kinase, Classic
Bacillus mycoides · GCF_001541985
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001541985#AWW70_RS13345Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 333 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.000000025:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.6% of protein
Raw token
HATPase_c:246:0.0000000000106:327:103:109- Raw architecture: HAMP:55:0.000000282:122:71:69#HisKA:137:0.000000025:190:54:64#HATPase_c:246:0.0000000000106:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001541985::NZ_LRPH01000049.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span193984-194985Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_14370RefSeq proteinWP_060750382.1
Context group ID
GCF_001541985::NZ_LRPH01000049.1::G00038Context members
AWW70_RS13345
Partner locus tags
AWW70_RS13345
Partner old locus tags
AWW70_14370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060750382.1Primary protein accession used for annex mappings.
UniProt accessionA0A109G9A6Primary UniProt accession resolved in the annex database.
UniProt IDA0A109G9A6_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS13345Primary locus identifier stored in the genes table.
Old locus tagAWW70_14370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000049.1Sequence record reported by the local genomic context database.
Genomic interval193 984-194 985 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span193 984-194 985 ntGCF_001541985::NZ_LRPH01000049.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000049.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000049.1All displayed genes belong to this local TCS context.
Neighborhood span193 984-194 985 nt1 002 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
193 984 nt194 985 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWW70_RS13345GCF_001541985#AWW70_RS13345
HKClassicCurrent focus
193 984-194 985 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS13345The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2851736
Simplified PFAM architecture for HKOC_2851736
PFAM domain coverage: 135 / 333 aa (40.5%)
1 aa333 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-327]
- Domain count: 2
- Matched identifier: HKOC_2851736
- Positioned domains: HisKA 137-190 ; HATPase_c 247-327
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS13345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key