1 HisKA_3#1
199-266 aa · 68 aa · 16.8% of protein
Raw token
HisKA_3:199:7.89e-17:266:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS12005
Histidine kinase, Classic
Bacillus mycoides · GCF_001541985
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001541985#AWW70_RS12005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 405 aa (38.3%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-395 aa · 87 aa · 21.5% of protein
Raw token
HATPase_c:309:0.00000000000000505:395:100:109- Raw architecture: HisKA_3:199:7.89e-17:266:68:68#HATPase_c:309:0.00000000000000505:395:100:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001541985::NZ_LRPH01000047.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18176-20027Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_13030RefSeq proteinWP_060750208.1
Context group ID
GCF_001541985::NZ_LRPH01000047.1::G00034Context members
AWW70_RS12005AWW70_RS12010
Partner locus tags
AWW70_RS12005AWW70_RS12010
Partner old locus tags
AWW70_13030AWW70_13035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060750208.1Primary protein accession used for annex mappings.
UniProt accessionA0A120EH89Primary UniProt accession resolved in the annex database.
UniProt IDA0A120EH89_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS12005Primary locus identifier stored in the genes table.
Old locus tagAWW70_13030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000047.1Sequence record reported by the local genomic context database.
Genomic interval18 176-19 393 nt1 218 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 176-20 027 ntGCF_001541985::NZ_LRPH01000047.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000047.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000047.1All displayed genes belong to this local TCS context.
Neighborhood span18 176-20 027 nt1 852 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 176 nt20 027 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWW70_RS12005GCF_001541985#AWW70_RS12005
HKClassicCurrent focus
18 176-19 393 nt · Forward (+)
AWW70_RS12010GCF_001541985#AWW70_RS12010
RRNarL
19 383-20 027 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS12005The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2398427
Simplified PFAM architecture for HKOC_2398427
PFAM domain coverage: 157 / 405 aa (38.8%)
1 aa405 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[199-265] | HATPase_c[307-396]
- Domain count: 2
- Matched identifier: HKOC_2398427
- Positioned domains: HisKA_3 199-265 ; HATPase_c 307-396
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS12005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key