1 HAMP#1
81-151 aa · 71 aa · 18.6% of protein
Raw token
HAMP:81:0.0000000000087:151:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS11605
Histidine kinase, Classic
Bacillus mycoides · GCF_001541985
ClassHKTypeClassicLength381 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001541985#AWW70_RS11605Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length381 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 381 aa (65.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa381 aa
Domain-by-domain annotation3 items
2 HisKA#2
155-222 aa · 68 aa · 17.8% of protein
Raw token
HisKA:155:0.00000000013:222:68:643 HATPase_c#3
263-372 aa · 110 aa · 28.9% of protein
Raw token
HATPase_c:263:1.34e-29:372:110:109- Raw architecture: HAMP:81:0.0000000000087:151:71:69#HisKA:155:0.00000000013:222:68:64#HATPase_c:263:1.34e-29:372:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001541985::NZ_LRPH01000044.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42976-44804Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_01690RefSeq proteinWP_060750152.1
Context group ID
GCF_001541985::NZ_LRPH01000044.1::G00028Context members
AWW70_RS11605AWW70_RS11610
Partner locus tags
AWW70_RS11605AWW70_RS11610
Partner old locus tags
AWW70_01690AWW70_01695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060750152.1Primary protein accession used for annex mappings.
UniProt accessionA0A125PNI3Primary UniProt accession resolved in the annex database.
UniProt IDA0A125PNI3_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS11605Primary locus identifier stored in the genes table.
Old locus tagAWW70_01690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000044.1Sequence record reported by the local genomic context database.
Genomic interval42 976-44 121 nt1 146 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 976-44 804 ntGCF_001541985::NZ_LRPH01000044.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000044.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000044.1All displayed genes belong to this local TCS context.
Neighborhood span42 976-44 804 nt1 829 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 976 nt44 804 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWW70_RS11605GCF_001541985#AWW70_RS11605
HKClassicCurrent focus
42 976-44 121 nt · Reverse (-)
AWW70_RS11610GCF_001541985#AWW70_RS11610
RROmpR
44 121-44 804 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS11605The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2600067
Simplified PFAM architecture for HKOC_2600067
PFAM domain coverage: 228 / 381 aa (59.8%)
1 aa381 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[99-150] | HisKA[156-221] | HATPase_c[264-373]
- Domain count: 3
- Matched identifier: HKOC_2600067
- Positioned domains: HAMP 99-150 ; HisKA 156-221 ; HATPase_c 264-373
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS11605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key