1 PAS_4#1
229-318 aa · 90 aa · 11.0% of protein
Raw token
PAS_4:229:0.000000725:318:103:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS11535
Histidine kinase, Classic
Bacillus mycoides · GCF_001541985
ClassHKTypeClassicLength820 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001541985#AWW70_RS11535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length820 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage478 / 820 aa (58.3%)Merged over positioned domains only.
Domain description3 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa820 aa
Domain-by-domain annotation5 items
2 PAS_4#2
335-448 aa · 114 aa · 13.9% of protein
Raw token
PAS_4:335:0.0000000000000956:448:122:1103 PAS_4#3
472-581 aa · 110 aa · 13.4% of protein
Raw token
PAS_4:472:0.000000000451:581:113:1104 HisKA#4
598-659 aa · 62 aa · 7.6% of protein
Raw token
HisKA:598:0.0000000000000661:659:62:645 HATPase_c#5
706-807 aa · 102 aa · 12.4% of protein
Raw token
HATPase_c:706:1.18e-24:807:105:109- Raw architecture: PAS_4:229:0.000000725:318:103:110#PAS_4:335:0.0000000000000956:448:122:110#PAS_4:472:0.000000000451:581:113:110#HisKA:598:0.0000000000000661:659:62:64#HATPase_c:706:1.18e-24:807:105:109
- Domain description: 3 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001541985::NZ_LRPH01000044.1::G00027
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span30959-33421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_01620RefSeq proteinWP_060750142.1
Context group ID
GCF_001541985::NZ_LRPH01000044.1::G00027Context members
AWW70_RS11535
Partner locus tags
AWW70_RS11535
Partner old locus tags
AWW70_01620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060750142.1Primary protein accession used for annex mappings.
UniProt accessionA0A109GCU9Primary UniProt accession resolved in the annex database.
UniProt IDA0A109GCU9_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS11535Primary locus identifier stored in the genes table.
Old locus tagAWW70_01620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000044.1Sequence record reported by the local genomic context database.
Genomic interval30 959-33 421 nt2 463 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 959-33 421 ntGCF_001541985::NZ_LRPH01000044.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000044.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000044.1All displayed genes belong to this local TCS context.
Neighborhood span30 959-33 421 nt2 463 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 959 nt33 421 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWW70_RS11535GCF_001541985#AWW70_RS11535
HKClassicCurrent focus
30 959-33 421 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS11535The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0529767
Simplified PFAM architecture for HKOC_0529767
PFAM domain coverage: 580 / 820 aa (70.7%)
1 aa820 aa
5TM-5TMR_LYTPAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[21-142] | PAS_4[238-318] | PAS_4[336-448] | PAS_9[483-580] | HisKA[598-659] | HATPase_c[705-808]
- Domain count: 6
- Matched identifier: HKOC_0529767
- Positioned domains: 5TM-5TMR_LYT 21-142 ; PAS_4 238-318 ; PAS_4 336-448 ; PAS_9 483-580 ; HisKA 598-659 ; HATPase_c 705-808
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS11535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key