1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.000000000000994:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS02770
Histidine kinase, Classic
Bacillus mycoides · GCF_001541985
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001541985#AWW70_RS02770Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage230 / 476 aa (48.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-304 aa · 58 aa · 12.2% of protein
Raw token
HisKA:247:0.00000000000461:304:58:643 HATPase_c#3
362-464 aa · 103 aa · 21.6% of protein
Raw token
HATPase_c:362:1.36e-21:464:103:109- Raw architecture: HAMP:167:0.000000000000994:235:69:69#HisKA:247:0.00000000000461:304:58:64#HATPase_c:362:1.36e-21:464:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001541985::NZ_LRPH01000027.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113007-115120Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_05350RefSeq proteinWP_060749216.1
Context group ID
GCF_001541985::NZ_LRPH01000027.1::G00010Context members
AWW70_RS02765AWW70_RS02770
Partner locus tags
AWW70_RS02765AWW70_RS02770
Partner old locus tags
AWW70_05345AWW70_05350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060749216.1Primary protein accession used for annex mappings.
UniProt accessionA0A120EJS8Primary UniProt accession resolved in the annex database.
UniProt IDA0A120EJS8_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS02770Primary locus identifier stored in the genes table.
Old locus tagAWW70_05350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000027.1Sequence record reported by the local genomic context database.
Genomic interval113 690-115 120 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 007-115 120 ntGCF_001541985::NZ_LRPH01000027.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000027.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000027.1All displayed genes belong to this local TCS context.
Neighborhood span113 007-115 120 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 007 nt115 120 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWW70_RS02765GCF_001541985#AWW70_RS02765
RROmpR
113 007-113 678 nt · Forward (+)
AWW70_RS02770GCF_001541985#AWW70_RS02770
HKClassicCurrent focus
113 690-115 120 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS02770The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1656057
Simplified PFAM architecture for HKOC_1656057
PFAM domain coverage: 215 / 476 aa (45.2%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[248-308] | HATPase_c[361-462]
- Domain count: 3
- Matched identifier: HKOC_1656057
- Positioned domains: HAMP 184-235 ; HisKA 248-308 ; HATPase_c 361-462
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS02770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key