1 HisKA_3#1
177-240 aa · 64 aa · 17.1% of protein
Raw token
HisKA_3:177:1.82e-23:240:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWW70_RS02305
Histidine kinase, Classic
Bacillus mycoides · GCF_001541985
ClassHKTypeClassicLength375 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001541985#AWW70_RS02305Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length375 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 375 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa375 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
281-366 aa · 86 aa · 22.9% of protein
Raw token
HATPase_c:281:0.00000000106:366:104:109- Raw architecture: HisKA_3:177:1.82e-23:240:64:68#HATPase_c:281:0.00000000106:366:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001541985::NZ_LRPH01000027.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15423-17149Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWW70_04885RefSeq proteinWP_060749178.1
Context group ID
GCF_001541985::NZ_LRPH01000027.1::G00008Context members
AWW70_RS02305AWW70_RS02310
Partner locus tags
AWW70_RS02305AWW70_RS02310
Partner old locus tags
AWW70_04885AWW70_04890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_060749178.1Primary protein accession used for annex mappings.
UniProt accessionA0A109GI64Primary UniProt accession resolved in the annex database.
UniProt IDA0A109GI64_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWW70_RS02305Primary locus identifier stored in the genes table.
Old locus tagAWW70_04885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRPH01000027.1Sequence record reported by the local genomic context database.
Genomic interval15 423-16 550 nt1 128 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 423-17 149 ntGCF_001541985::NZ_LRPH01000027.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001541985::NZ_LRPH01000027.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRPH01000027.1All displayed genes belong to this local TCS context.
Neighborhood span15 423-17 149 nt1 727 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 423 nt17 149 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWW70_RS02305GCF_001541985#AWW70_RS02305
HKClassicCurrent focus
15 423-16 550 nt · Forward (+)
AWW70_RS02310GCF_001541985#AWW70_RS02310
RRNarL
16 547-17 149 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001541985#AWW70_RS02305The current gene is the representative for this cluster.
PFAM architectureDesK_N + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2650213
Simplified PFAM architecture for HKOC_2650213
PFAM domain coverage: 294 / 375 aa (78.4%)
1 aa375 aa
DesK_NHisKA_3HATPase_c
- Simplified architecture: DesK_N + HisKA_3 + HATPase_c
- Raw architecture: DesK_N[3-147] | HisKA_3[177-240] | HATPase_c[279-363]
- Domain count: 3
- Matched identifier: HKOC_2650213
- Positioned domains: DesK_N 3-147 ; HisKA_3 177-240 ; HATPase_c 279-363
Cluster members and taxonomy
Representative gene: GCF_001541985#AWW70_RS02305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_001541985
AssemblyASM154198v1 · Contighaploid
Genome composition5 918 334 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 72 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key