1 HisKA#1
228-296 aa · 69 aa · 15.3% of protein
Raw token
HisKA:228:0.000000000000272:296:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD26A54S_RS09895
Histidine kinase, Classic
Clostridioides difficile CD26A54_S · GCF_001484895
ClassHKTypeClassicLength450 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001484895#CD26A54S_RS09895Stable P2CS identifier used across views.
GenomeGCF_001484895Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length450 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 450 aa (39.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa450 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-449 aa · 107 aa · 23.8% of protein
Raw token
HATPase_c:343:1.28e-27:449:108:109- Raw architecture: HisKA:228:0.000000000000272:296:69:64#HATPase_c:343:1.28e-27:449:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001484895::NZ_AMDL01000004.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span68019-69371Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001484895::NZ_AMDL01000004.1::G00034Context members
CD26A54S_RS09895
Partner locus tags
CD26A54S_RS09895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021407249.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD26A54S_RS09895Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AMDL01000004.1Sequence record reported by the local genomic context database.
Genomic interval68 019-69 371 nt1 353 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 019-69 371 ntGCF_001484895::NZ_AMDL01000004.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001484895::NZ_AMDL01000004.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AMDL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span68 019-69 371 nt1 353 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 019 nt69 371 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CD26A54S_RS09895GCF_001484895#CD26A54S_RS09895
HKClassicCurrent focus
68 019-69 371 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209850Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747612
Simplified PFAM architecture for HKOC_1747612
PFAM domain coverage: 167 / 467 aa (35.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-306] | HATPase_c[362-466]
- Domain count: 2
- Matched identifier: HKOC_1747612
- Positioned domains: HisKA 245-306 ; HATPase_c 362-466
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 222 029 · GCF_001484895
AssemblyCD26A54SV1.0 · Contighaploid
Genome composition4 166 728 bp · 28,5% GCClostridioides difficile CD26A54_S
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key