1 PAS_4#1
206-314 aa · 109 aa · 18.9% of protein
Raw token
PAS_4:206:0.0000000000215:314:115:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD26A54S_RS08100
Histidine kinase, Classic
Clostridioides difficile CD26A54_S · GCF_001484895
ClassHKTypeClassicLength578 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001484895#CD26A54S_RS08100Stable P2CS identifier used across views.
GenomeGCF_001484895Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length578 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage290 / 578 aa (50.2%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
323-392 aa · 70 aa · 12.1% of protein
Raw token
HisKA:323:0.00000000000000156:392:70:643 HATPase_c#3
439-549 aa · 111 aa · 19.2% of protein
Raw token
HATPase_c:439:1.28e-27:549:111:109- Raw architecture: PAS_4:206:0.0000000000215:314:115:110#HisKA:323:0.00000000000000156:392:70:64#HATPase_c:439:1.28e-27:549:111:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001484895::NZ_AMDL01000003.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span135364-137100Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001484895::NZ_AMDL01000003.1::G00025Context members
CD26A54S_RS08100
Partner locus tags
CD26A54S_RS08100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234702239.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD26A54S_RS08100Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AMDL01000003.1Sequence record reported by the local genomic context database.
Genomic interval135 364-137 100 nt1 737 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span135 364-137 100 ntGCF_001484895::NZ_AMDL01000003.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001484895::NZ_AMDL01000003.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AMDL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span135 364-137 100 nt1 737 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
135 364 nt137 100 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CD26A54S_RS08100GCF_001484895#CD26A54S_RS08100
HKClassicCurrent focus
135 364-137 100 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0208160Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0977572
Simplified PFAM architecture for HKOC_0977572
PFAM domain coverage: 290 / 618 aa (46.9%)
1 aa618 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[246-354] | HisKA[363-432] | HATPase_c[479-589]
- Domain count: 3
- Matched identifier: HKOC_0977572
- Positioned domains: PAS_4 246-354 ; HisKA 363-432 ; HATPase_c 479-589
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0208160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 222 029 · GCF_001484895
AssemblyCD26A54SV1.0 · Contighaploid
Genome composition4 166 728 bp · 28,5% GCClostridioides difficile CD26A54_S
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key