1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.37e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CD26A54R_RS16385
Response regulator OmpR family
Clostridioides difficile CD26A54_R · GCF_001484885
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_001484885#CD26A54R_RS16385Stable P2CS identifier used across views.
GenomeGCF_001484885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.07e-28:232:78:77- Raw architecture: Response_reg:5:1.37e-36:114:111:111#Trans_reg_C:155:4.07e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_001484885::NZ_AMDM01000004.1::G00053
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span1496112-1501837Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_001484885::NZ_AMDM01000004.1::G00053Context members
CD26A54R_RS16380CD26A54R_RS16385CD26A54R_RS16390CD26A54R_RS16395CD26A54R_RS16400
Partner locus tags
CD26A54R_RS16380CD26A54R_RS16385CD26A54R_RS16390CD26A54R_RS16395CD26A54R_RS16400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891729.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N7P0Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N7P0_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCD26A54R_RS16385Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AMDM01000004.1Sequence record reported by the local genomic context database.
Genomic interval1 497 263-1 497 961 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 496 112-1 501 837 ntGCF_001484885::NZ_AMDM01000004.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001484885::NZ_AMDM01000004.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AMDM01000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 496 112-1 501 837 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 496 112 nt1 501 837 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
CD26A54R_RS16380GCF_001484885#CD26A54R_RS16380
HKClassic
1 496 112-1 497 227 nt · Reverse (-)
CD26A54R_RS16385GCF_001484885#CD26A54R_RS16385
RROmpRCurrent focus
1 497 263-1 497 961 nt · Reverse (-)
CD26A54R_RS16390GCF_001484885#CD26A54R_RS16390
RROmpR
1 498 343-1 499 023 nt · Reverse (-)
CD26A54R_RS16395GCF_001484885#CD26A54R_RS16395
HKClassic
1 499 073-1 501 088 nt · Reverse (-)
CD26A54R_RS16400GCF_001484885#CD26A54R_RS16400
RROmpR
1 501 160-1 501 837 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119294
Simplified PFAM architecture for RROC_1119294
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1119294
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 222 030 · GCF_001484885
AssemblyCD26a54Rv1.0 · Contighaploid
Genome composition4 146 282 bp · 28,5% GCClostridioides difficile CD26A54_R
Signal transduction countsGenes 105 · HK 49 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key